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325
src/python/histogram_base.cpp
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325
src/python/histogram_base.cpp
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@@ -0,0 +1,325 @@
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#include <boost/histogram/axis.hpp>
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#include <boost/histogram/histogram_base.hpp>
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#include <boost/python.hpp>
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#include <boost/python/raw_function.hpp>
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#include <boost/python/def_visitor.hpp>
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#include <boost/utility/enable_if.hpp>
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#include <boost/type_traits.hpp>
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#include <sstream>
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#include <string>
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namespace boost {
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namespace histogram {
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namespace {
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python::object
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variable_axis_init(python::tuple args, python::dict kwargs) {
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using namespace python;
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using python::tuple;
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object self = args[0];
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object pyinit = self.attr("__init__");
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if (len(args) < 2) {
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PyErr_SetString(PyExc_TypeError, "require at least two arguments");
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throw_error_already_set();
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}
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std::vector<double> v;
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for (int i = 1, n = len(args); i < n; ++i) {
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v.push_back(extract<double>(args[i]));
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}
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std::string label;
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bool uoflow = true;
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while (len(kwargs) > 0) {
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tuple kv = kwargs.popitem();
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std::string k = extract<std::string>(kv[0]);
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object v = kv[1];
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if (k == "label")
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label = extract<std::string>(v);
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else if (k == "uoflow")
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uoflow = extract<bool>(v);
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else {
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std::stringstream s;
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s << "keyword " << k << " not recognized";
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PyErr_SetString(PyExc_KeyError, s.str().c_str());
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throw_error_already_set();
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}
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}
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return pyinit(v, label, uoflow);
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}
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python::object
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category_axis_init(python::tuple args, python::dict kwargs) {
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using namespace python;
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object self = args[0];
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object pyinit = self.attr("__init__");
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if (len(args) == 1) {
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PyErr_SetString(PyExc_TypeError, "require at least one argument");
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throw_error_already_set();
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}
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if (len(kwargs) > 0) {
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PyErr_SetString(PyExc_TypeError, "unknown keyword argument");
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throw_error_already_set();
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}
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if (len(args) == 2) {
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extract<std::string> es(args[1]);
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if (es.check())
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pyinit(es);
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else {
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PyErr_SetString(PyExc_TypeError, "require one or several string arguments");
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throw_error_already_set();
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}
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}
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std::vector<std::string> c;
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for (int i = 1, n = len(args); i < n; ++i)
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c.push_back(extract<std::string>(args[i]));
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return pyinit(c);
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}
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// python::object
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// regular_axis_data(const regular_axis& self) {
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// #if HAVE_NUMPY
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// py_intp dims[1] = { self.size() + 1 };
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// PyArrayObject* a = (PyArrayObject*)PyArray_SimpleNew(1, dims, NPY_DOUBLE);
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// for (unsigned i = 0; i < self.size() + 1; ++i) {
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// double* pv = (double*)PyArray_GETPTR1(a, i);
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// *pv = self.left(i);
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// }
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// return python::object(handle<>((PyObject*)a));
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// #else
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// list v;
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// for (int i = 0; i < self.size() + 1; ++i)
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// v.append(self.left(i));
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// return v;
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// #endif
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// }
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struct axis_visitor : public static_visitor<python::object>
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{
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template <typename T>
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python::object operator()(const T& t) const { return python::object(T(t)); }
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};
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template <typename T>
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unsigned
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axis_len(const T& t) {
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return t.bins() + 1;
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}
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template <>
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unsigned
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axis_len(const category_axis& t) {
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return t.bins();
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}
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template <>
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unsigned
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axis_len(const integer_axis& t) {
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return t.bins();
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}
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template <typename T>
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typename T::value_type
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axis_getitem(const T& t, int i) {
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if (i == axis_len(t)) {
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PyErr_SetString(PyExc_StopIteration, "no more");
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python::throw_error_already_set();
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}
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return t[i];
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}
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template<typename T>
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struct has_index_method
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{
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struct yes { char x[1]; };
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struct no { char x[2]; };
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template<typename U, int (U::*)(double) const> struct SFINAE {};
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template<typename U> static yes test( SFINAE<U, &U::index>* );
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template<typename U> static no test( ... );
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enum { value = sizeof(test<T>(0)) == sizeof(yes) };
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};
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std::string escape(const std::string& s) {
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std::ostringstream os;
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os << '\'';
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for (unsigned i = 0; i < s.size(); ++i) {
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const char c = s[i];
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if (c == '\'' && (i == 0 || s[i - 1] != '\\'))
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os << "\\\'";
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else
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os << c;
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}
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os << '\'';
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return os.str();
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}
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std::string axis_repr(const regular_axis& a) {
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std::stringstream s;
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s << "regular_axis(" << a.bins() << ", " << a[0] << ", " << a[a.bins()];
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if (!a.label().empty())
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s << ", label=" << escape(a.label());
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if (!a.uoflow())
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s << ", uoflow=False";
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s << ")";
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return s.str();
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}
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std::string axis_repr(const polar_axis& a) {
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std::stringstream s;
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s << "polar_axis(" << a.bins();
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if (a[0] != 0.0)
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s << ", " << a[0];
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if (!a.label().empty())
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s << ", label=" << escape(a.label());
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s << ")";
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return s.str();
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}
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std::string axis_repr(const variable_axis& a) {
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std::stringstream s;
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s << "variable_axis(" << a[0];
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for (int i = 1; i <= a.bins(); ++i)
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s << ", " << a.left(i);
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if (!a.label().empty())
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s << ", label=" << escape(a.label());
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if (!a.uoflow())
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s << ", uoflow=False";
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s << ")";
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return s.str();
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}
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std::string axis_repr(const category_axis& a) {
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std::stringstream s;
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s << "category_axis(";
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for (int i = 0; i < a.bins(); ++i)
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s << escape(a[i]) << (i == (a.bins() - 1)? ")" : ", ");
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return s.str();
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}
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std::string axis_repr(const integer_axis& a) {
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std::stringstream s;
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s << "integer_axis(" << a[0] << ", " << a[a.bins() - 1];
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if (!a.label().empty())
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s << ", label=" << escape(a.label());
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if (!a.uoflow())
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s << ", uoflow=False";
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s << ")";
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return s.str();
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}
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template <class T>
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struct axis_suite : public python::def_visitor<axis_suite<T> > {
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template <typename Class, typename U>
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static
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typename enable_if_c<has_index_method<U>::value, void>::type
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add_axis_index(Class& cl) {
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cl.def("index", &U::index);
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}
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template <typename Class, typename U>
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static
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typename disable_if_c<has_index_method<U>::value, void>::type
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add_axis_index(Class& cl) {}
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template <typename Class, typename U>
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static
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typename enable_if<is_base_of<axis_base, U>, void>::type
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add_axis_label(Class& cl) {
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cl.add_property("label",
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python::make_function((const std::string&(U::*)() const) &U::label,
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python::return_value_policy<python::copy_const_reference>()),
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(void(U::*)(const std::string&)) &U::label);
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}
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template <typename Class, typename U>
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static
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typename disable_if<is_base_of<axis_base, U>, void>::type
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add_axis_label(Class& cl) {}
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template <class Class>
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static void
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visit(Class& cl)
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{
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cl.add_property("bins", &T::bins);
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add_axis_index<Class, T>(cl);
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add_axis_label<Class, T>(cl);
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cl.def("__len__", axis_len<T>);
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cl.def("__getitem__", axis_getitem<T>);
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cl.def("__repr__", (std::string (*)(const T&)) &axis_repr);
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cl.def(python::self == python::self);
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}
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};
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python::object
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histogram_base_axis(const histogram_base& self, unsigned i)
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{
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return apply_visitor(axis_visitor(), self.axis<axis_type>(i));
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}
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} // namespace
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void register_histogram_base() {
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using namespace python;
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using python::arg;
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// used to pass arguments from raw python init to specialized C++ constructors
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class_<std::vector<double> >("vector_double", no_init);
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class_<std::vector<std::string> >("vector_string", no_init);
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class_<axes_type>("axes", no_init);
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class_<regular_axis>("regular_axis", no_init)
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.def(init<unsigned, double, double, std::string, bool>(
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(arg("bin"), arg("min"), arg("max"),
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arg("label") = std::string(),
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arg("uoflow") = true)))
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.def(axis_suite<regular_axis>())
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;
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class_<polar_axis>("polar_axis", no_init)
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.def(init<unsigned, double, std::string>(
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(arg("bin"), arg("start") = 0.0,
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arg("label") = std::string())))
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.def(axis_suite<polar_axis>())
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;
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class_<variable_axis>("variable_axis", no_init)
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.def("__init__", raw_function(variable_axis_init))
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.def(init<std::vector<double>, std::string, bool>())
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.def(axis_suite<variable_axis>())
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;
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class_<category_axis>("category_axis", no_init)
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.def("__init__", raw_function(category_axis_init))
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.def(init<std::string>())
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.def(init<std::vector<std::string> >())
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.def(axis_suite<category_axis>())
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;
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class_<integer_axis>("integer_axis", no_init)
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.def(init<int, int, std::string, bool>(
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(arg("min"), arg("max"),
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arg("label") = std::string(),
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arg("uoflow") = true)))
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.def(axis_suite<integer_axis>())
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;
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class_<histogram_base>("histogram_base", no_init)
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.add_property("dim", &histogram_base::dim)
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.def("bins", &histogram_base::bins)
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.def("shape", &histogram_base::shape)
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.def("axis", histogram_base_axis)
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;
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}
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}
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}
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22
src/python/module.cpp
Normal file
22
src/python/module.cpp
Normal file
@@ -0,0 +1,22 @@
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#include <boost/python/module.hpp>
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#ifdef USE_NUMPY
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# define PY_ARRAY_UNIQUE_SYMBOL boost_histogram_ARRAY_API
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# define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
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# include <numpy/arrayobject.h>
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#endif
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namespace boost {
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namespace histogram {
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void register_histogram_base();
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void register_nhistogram();
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}
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}
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BOOST_PYTHON_MODULE(histogram)
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{
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#ifdef USE_NUMPY
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import_array();
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#endif
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boost::histogram::register_histogram_base();
|
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boost::histogram::register_nhistogram();
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}
|
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183
src/python/nhistogram.cpp
Normal file
183
src/python/nhistogram.cpp
Normal file
@@ -0,0 +1,183 @@
|
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#include <boost/histogram/axis.hpp>
|
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#include <boost/histogram/nhistogram.hpp>
|
||||
#include <boost/python.hpp>
|
||||
#include <boost/python/raw_function.hpp>
|
||||
#include <boost/foreach.hpp>
|
||||
#include <boost/shared_ptr.hpp>
|
||||
#include "serialization_suite.hpp"
|
||||
#ifdef USE_NUMPY
|
||||
# define NO_IMPORT_ARRAY
|
||||
# define PY_ARRAY_UNIQUE_SYMBOL boost_histogram_ARRAY_API
|
||||
# define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
|
||||
# include <numpy/arrayobject.h>
|
||||
#endif
|
||||
|
||||
namespace boost {
|
||||
namespace histogram {
|
||||
|
||||
python::object
|
||||
nhistogram_init(python::tuple args, python::dict kwargs) {
|
||||
using namespace python;
|
||||
using python::tuple;
|
||||
|
||||
object self = args[0];
|
||||
object pyinit = self.attr("__init__");
|
||||
|
||||
if (kwargs) {
|
||||
PyErr_SetString(PyExc_TypeError, "no keyword arguments allowed");
|
||||
throw_error_already_set();
|
||||
}
|
||||
|
||||
// normal constructor
|
||||
axes_type axes;
|
||||
for (unsigned i = 1, n = len(args); i < n; ++i) {
|
||||
object pa = args[i];
|
||||
extract<regular_axis> er(pa);
|
||||
if (er.check()) { axes.push_back(er()); continue; }
|
||||
extract<polar_axis> ep(pa);
|
||||
if (ep.check()) { axes.push_back(ep()); continue; }
|
||||
extract<variable_axis> ev(pa);
|
||||
if (ev.check()) { axes.push_back(ev()); continue; }
|
||||
extract<category_axis> ec(pa);
|
||||
if (ec.check()) { axes.push_back(ec()); continue; }
|
||||
extract<integer_axis> ei(pa);
|
||||
if (ei.check()) { axes.push_back(ei()); continue; }
|
||||
PyErr_SetString(PyExc_TypeError, "require an axis object");
|
||||
throw_error_already_set();
|
||||
}
|
||||
return pyinit(axes);
|
||||
}
|
||||
|
||||
python::dict
|
||||
nhistogram_array_interface(nhistogram& self) {
|
||||
using namespace python;
|
||||
using python::tuple;
|
||||
using python::make_tuple;
|
||||
|
||||
list shape;
|
||||
for (unsigned i = 0; i < self.dim(); ++i)
|
||||
shape.append(self.shape(i));
|
||||
dict d;
|
||||
d["shape"] = tuple(shape);
|
||||
d["typestr"] = str("<u") + str(self.data().depth());
|
||||
d["data"] = make_tuple((long long)(self.data().buffer()), false);
|
||||
return d;
|
||||
}
|
||||
|
||||
python::object
|
||||
nhistogram_fill(python::tuple args, python::dict kwargs) {
|
||||
using namespace python;
|
||||
|
||||
const unsigned nargs = len(args);
|
||||
nhistogram& self = extract<nhistogram&>(args[0]);
|
||||
|
||||
#ifdef USE_NUMPY
|
||||
if (nargs == 2) {
|
||||
object o = args[1];
|
||||
if (PySequence_Check(o.ptr())) {
|
||||
PyArrayObject* a = (PyArrayObject*)
|
||||
PyArray_FROM_OTF(o.ptr(), NPY_DOUBLE, NPY_ARRAY_IN_ARRAY);
|
||||
if (!a) {
|
||||
PyErr_SetString(PyExc_ValueError, "could not convert sequence into array");
|
||||
throw_error_already_set();
|
||||
}
|
||||
|
||||
npy_intp* dims = PyArray_DIMS(a);
|
||||
switch (PyArray_NDIM(a)) {
|
||||
case 1:
|
||||
if (self.dim() > 1) {
|
||||
PyErr_SetString(PyExc_ValueError, "array has to be two-dimensional");
|
||||
throw_error_already_set();
|
||||
}
|
||||
break;
|
||||
case 2:
|
||||
if (self.dim() != dims[1])
|
||||
{
|
||||
PyErr_SetString(PyExc_ValueError, "size of second dimension does not match");
|
||||
throw_error_already_set();
|
||||
}
|
||||
break;
|
||||
default:
|
||||
PyErr_SetString(PyExc_ValueError, "array has wrong dimension");
|
||||
throw_error_already_set();
|
||||
}
|
||||
|
||||
for (unsigned i = 0; i < dims[0]; ++i) {
|
||||
double* v = (double*)PyArray_GETPTR1(a, i);
|
||||
self.fill(v);
|
||||
}
|
||||
|
||||
Py_DECREF(a);
|
||||
return object();
|
||||
}
|
||||
}
|
||||
#endif
|
||||
|
||||
const unsigned dim = nargs - 1;
|
||||
if (dim != self.dim()) {
|
||||
PyErr_SetString(PyExc_TypeError, "wrong number of arguments");
|
||||
throw_error_already_set();
|
||||
}
|
||||
|
||||
if (kwargs) {
|
||||
PyErr_SetString(PyExc_TypeError, "no keyword arguments allowed");
|
||||
throw_error_already_set();
|
||||
}
|
||||
|
||||
double v[BOOST_HISTOGRAM_AXIS_LIMIT];
|
||||
for (unsigned i = 0; i < dim; ++i)
|
||||
v[i] = extract<double>(args[1 + i]);
|
||||
self.fill(v);
|
||||
return object();
|
||||
}
|
||||
|
||||
unsigned
|
||||
nhistogram_depth(const nhistogram& self) {
|
||||
return self.data().depth();
|
||||
}
|
||||
|
||||
uint64_t
|
||||
nhistogram_getitem(const nhistogram& self, python::object oidx) {
|
||||
using namespace python;
|
||||
|
||||
if (self.dim() == 1)
|
||||
return self(extract<int>(oidx)());
|
||||
|
||||
const unsigned dim = len(oidx);
|
||||
if (dim != self.dim()) {
|
||||
PyErr_SetString(PyExc_RuntimeError, "wrong number of arguments");
|
||||
throw_error_already_set();
|
||||
}
|
||||
|
||||
int idx[BOOST_HISTOGRAM_AXIS_LIMIT];
|
||||
for (unsigned i = 0; i < dim; ++i)
|
||||
idx[i] = extract<int>(oidx[i]);
|
||||
|
||||
return self(idx);
|
||||
}
|
||||
|
||||
void register_nhistogram()
|
||||
{
|
||||
using namespace python;
|
||||
|
||||
class_<
|
||||
nhistogram, bases<histogram_base>,
|
||||
shared_ptr<nhistogram>
|
||||
>("nhistogram", no_init)
|
||||
.def("__init__", raw_function(nhistogram_init))
|
||||
// shadowed C++ ctors
|
||||
.def(init<const axes_type&>())
|
||||
.add_property("__array_interface__", nhistogram_array_interface)
|
||||
.def("fill", raw_function(nhistogram_fill))
|
||||
.add_property("depth", nhistogram_depth)
|
||||
.add_property("sum", &nhistogram::sum)
|
||||
.def("__getitem__", nhistogram_getitem)
|
||||
.def(self == self)
|
||||
.def(self += self)
|
||||
.def(self + self)
|
||||
.def_pickle(serialization_suite<nhistogram>())
|
||||
;
|
||||
}
|
||||
|
||||
}
|
||||
}
|
||||
93
src/python/serialization_suite.hpp
Normal file
93
src/python/serialization_suite.hpp
Normal file
@@ -0,0 +1,93 @@
|
||||
#ifndef _BOOST_PYTHON_SERIALIZATION_SUITE_HPP_
|
||||
#define _BOOST_PYTHON_SERIALIZATION_SUITE_HPP_
|
||||
|
||||
#include <boost/iostreams/concepts.hpp>
|
||||
#include <boost/iostreams/stream.hpp>
|
||||
#include <boost/iostreams/device/array.hpp>
|
||||
#include <boost/archive/text_iarchive.hpp>
|
||||
#include <boost/archive/text_oarchive.hpp>
|
||||
#include <boost/python.hpp>
|
||||
#include <iosfwd>
|
||||
#include <algorithm>
|
||||
|
||||
namespace boost {
|
||||
|
||||
class str_sink : public iostreams::sink {
|
||||
public:
|
||||
str_sink(PyObject** pstr) :
|
||||
pstr_(pstr),
|
||||
len_(0),
|
||||
pos_(0)
|
||||
{ assert(*pstr == 0); }
|
||||
|
||||
std::streamsize write(const char* s, std::streamsize n)
|
||||
{
|
||||
if (len_ == 0) {
|
||||
*pstr_ = PyString_FromStringAndSize(s, n);
|
||||
if (*pstr_ == 0) {
|
||||
PyErr_SetString(PyExc_RuntimeError, "cannot allocate memory");
|
||||
python::throw_error_already_set();
|
||||
}
|
||||
} else {
|
||||
if (pos_ + n > len_) {
|
||||
len_ = pos_ + n;
|
||||
if (_PyString_Resize(pstr_, len_) == -1)
|
||||
python::throw_error_already_set();
|
||||
}
|
||||
char* b = PyString_AS_STRING(*pstr_);
|
||||
std::copy(s, s + n, b + pos_);
|
||||
}
|
||||
pos_ += n;
|
||||
return n;
|
||||
}
|
||||
|
||||
private:
|
||||
PyObject** pstr_;
|
||||
std::streamsize len_;
|
||||
std::streamsize pos_;
|
||||
};
|
||||
|
||||
template<class T>
|
||||
struct serialization_suite : python::pickle_suite
|
||||
{
|
||||
static
|
||||
python::tuple getstate(python::object obj)
|
||||
{
|
||||
PyObject* pobj = 0;
|
||||
iostreams::stream<str_sink> os(&pobj);
|
||||
archive::text_oarchive oa(os);
|
||||
oa << python::extract<const T&>(obj)();
|
||||
os.flush();
|
||||
return python::make_tuple(obj.attr("__dict__"),
|
||||
python::object(python::handle<>(pobj)));
|
||||
}
|
||||
|
||||
static
|
||||
void setstate(python::object obj, python::tuple state)
|
||||
{
|
||||
if (python::len(state) != 2) {
|
||||
PyErr_SetObject(PyExc_ValueError,
|
||||
("expected 2-item tuple in call to __setstate__; got %s"
|
||||
% state).ptr());
|
||||
python::throw_error_already_set();
|
||||
}
|
||||
|
||||
// restore the object's __dict__
|
||||
python::dict d = python::extract<python::dict>(obj.attr("__dict__"));
|
||||
d.update(state[0]);
|
||||
|
||||
// restore the C++ object
|
||||
python::object o = state[1];
|
||||
iostreams::stream<iostreams::array_source>
|
||||
is(python::extract<const char*>(o)(), python::len(o));
|
||||
archive::text_iarchive ia(is);
|
||||
ia >> python::extract<T&>(obj)();
|
||||
}
|
||||
|
||||
static
|
||||
bool getstate_manages_dict() { return true; }
|
||||
};
|
||||
|
||||
}
|
||||
|
||||
#endif
|
||||
Reference in New Issue
Block a user