new feature, filling with weights

This commit is contained in:
Hans Dembinski
2016-04-09 16:31:16 -04:00
parent 14c7a282dc
commit 103fa6cf0a
14 changed files with 645 additions and 355 deletions

178
src/python/histogram.cpp Normal file
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#include "serialization_suite.hpp"
#include <boost/histogram/axis.hpp>
#include <boost/histogram/histogram.hpp>
#include <boost/python.hpp>
#include <boost/python/raw_function.hpp>
#include <boost/foreach.hpp>
#include <boost/shared_ptr.hpp>
#ifdef USE_NUMPY
# define NO_IMPORT_ARRAY
# define PY_ARRAY_UNIQUE_SYMBOL boost_histogram_ARRAY_API
# define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
# include <numpy/arrayobject.h>
#endif
namespace boost {
namespace histogram {
python::object
histogram_init(python::tuple args, python::dict kwargs) {
using namespace python;
using python::tuple;
object self = args[0];
object pyinit = self.attr("__init__");
if (kwargs) {
PyErr_SetString(PyExc_TypeError, "no keyword arguments allowed");
throw_error_already_set();
}
// normal constructor
axes_type axes;
for (unsigned i = 1, n = len(args); i < n; ++i) {
object pa = args[i];
extract<regular_axis> er(pa);
if (er.check()) { axes.push_back(er()); continue; }
extract<polar_axis> ep(pa);
if (ep.check()) { axes.push_back(ep()); continue; }
extract<variable_axis> ev(pa);
if (ev.check()) { axes.push_back(ev()); continue; }
extract<category_axis> ec(pa);
if (ec.check()) { axes.push_back(ec()); continue; }
extract<integer_axis> ei(pa);
if (ei.check()) { axes.push_back(ei()); continue; }
PyErr_SetString(PyExc_TypeError, "require an axis object");
throw_error_already_set();
}
return pyinit(axes);
}
python::object
histogram_fill(python::tuple args, python::dict kwargs) {
using namespace python;
const unsigned nargs = len(args);
histogram& self = extract<histogram&>(args[0]);
#ifdef USE_NUMPY
if (nargs == 2) {
object o = args[1];
if (PySequence_Check(o.ptr())) {
PyArrayObject* a = (PyArrayObject*)
PyArray_FROM_OTF(o.ptr(), NPY_DOUBLE, NPY_ARRAY_IN_ARRAY);
if (!a) {
PyErr_SetString(PyExc_ValueError, "could not convert sequence into array");
throw_error_already_set();
}
npy_intp* dims = PyArray_DIMS(a);
switch (PyArray_NDIM(a)) {
case 1:
if (self.dim() > 1) {
PyErr_SetString(PyExc_ValueError, "array has to be two-dimensional");
throw_error_already_set();
}
break;
case 2:
if (self.dim() != dims[1])
{
PyErr_SetString(PyExc_ValueError, "size of second dimension does not match");
throw_error_already_set();
}
break;
default:
PyErr_SetString(PyExc_ValueError, "array has wrong dimension");
throw_error_already_set();
}
for (unsigned i = 0; i < dims[0]; ++i) {
double* v = (double*)PyArray_GETPTR1(a, i);
self.fill(self.dim(), v);
}
Py_DECREF(a);
return object();
}
}
#endif
const unsigned dim = nargs - 1;
if (dim != self.dim()) {
PyErr_SetString(PyExc_TypeError, "wrong number of arguments");
throw_error_already_set();
}
if (kwargs) {
PyErr_SetString(PyExc_TypeError, "no keyword arguments allowed");
throw_error_already_set();
}
double v[BOOST_HISTOGRAM_AXIS_LIMIT];
for (unsigned i = 0; i < dim; ++i)
v[i] = extract<double>(args[1 + i]);
self.fill(self.dim(), v);
return object();
}
uint64_t
histogram_getitem(const histogram& self, python::object oidx) {
using namespace python;
if (self.dim() == 1)
return self.value(extract<int>(oidx)());
const unsigned dim = len(oidx);
if (dim != self.dim()) {
PyErr_SetString(PyExc_RuntimeError, "wrong number of arguments");
throw_error_already_set();
}
int idx[BOOST_HISTOGRAM_AXIS_LIMIT];
for (unsigned i = 0; i < dim; ++i)
idx[i] = extract<int>(oidx[i]);
return self.value(self.dim(), idx);
}
class buffer_access {
public:
static
python::dict
histogram_array_interface(histogram& self) {
python::list shape;
for (unsigned i = 0; i < self.dim(); ++i)
shape.append(self.shape(i));
python::dict d;
d["shape"] = python::tuple(shape);
d["typestr"] = python::str("<u") + python::str(self.data_.depth());
d["data"] = python::make_tuple((long long)(self.data_.buffer()), false);
return d;
}
};
void register_histogram()
{
using namespace python;
class_<
histogram, bases<histogram_base>,
shared_ptr<histogram>
>("histogram", no_init)
.def("__init__", raw_function(histogram_init))
// shadowed C++ ctors
.def(init<const axes_type&>())
.add_property("__array_interface__", &buffer_access::histogram_array_interface)
.def("fill", raw_function(histogram_fill))
.add_property("depth", &histogram::depth)
.add_property("sum", &histogram::sum)
.def("__getitem__", histogram_getitem)
.def(self == self)
.def(self += self)
.def(self + self)
.def_pickle(serialization_suite<histogram>())
;
}
}
}